Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTANQM-ERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNE-LLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGE-YIGSYTVLMKIEEDAE
4Q28 Chain:A ((2-111))
GHHHHHHSHMRRSIVVIHPDT------------------------GRELSPEEAHRAGLI-------DWNMFVKLRSQECDWEEISVKGPNGESSVIHD-----RKSGKKFSIEEALQSGR--LT--PAQYDRYVNKDMSIQELAVLVSG-----
General information:
TITO was launched using:
RESULT:
Template:
4Q28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14754 for 642 contacts (-23.0/contact) +
2D Compatibility (PS) -11216 + (NN) -3366 + (LL) 3328
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -29608.0 ( -46.12 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_4Q28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q28-query.scw
PDB file :
Tito_Scwrl_4Q28.pdb
: