Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQP--EENAIYPN--DDMEGTFHLGAFE--KDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNA---RIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN
3LOD Chain:A ((2-152))
YTITDIAPTDAEFIALIAALDAWQET------LDLSQLPPQTVIALAIRSPQGEAVGCGAIVLSEE------GFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQPDPLSVFMEKPLF--------
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25812 for 929 contacts (-27.8/contact) +
2D Compatibility (PS) -14351 + (NN) -2534 + (LL) 1132
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -44715.0 ( -48.13 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: