Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VFNIQTFNAIAKEGLKTFDLEKYVID--------A-N----Q-PADGILLRSYN-LHDFDF--PETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPILEGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMDVVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLVKDNAVLLNFSRGELVDSASVKEALDDGLLRLYITDFAT----KELLNHKKVHVFPHLGASTEEAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITTELGKYSLNILDMINRSKNEYAYTLIDIDKE--TQANLEQLKQDLLAVQGVLRVRVIEPLGVTV |
| 1SC6 Chain:A ((4-404)) | KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG----------VGN-----SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV--DPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVA---EKALQAMKAIPGTIRARLLY------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SC6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200183 for 3007 contacts (-66.6/contact) +
2D Compatibility (PS) -39214 + (NN) -11482 + (LL) 2488
1D Compatibility (HY) -19200 + (ID) 5250
Total energy: -272841.0 ( -90.74 by residue)
QMean score : 0.492
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