Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYDHLLNLTHYKDINPNLDLAIDYLLSHDLRNLDIGTYHISPEVILM--VQSNQLSESFDHIFEYHKKYLDIHYVIEGHEVIKLGKGDKVEVEEYLGDIGFIKCSEETSFDLRDNYIAFFFPEEAHQPNGMGSLGNYVKKGVLKVLMA
1LKN Chain:A ((1-89))
---------------------------------MEVKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEK--GDLVTFPKGLRCRWKVLEPVRKHYNLF-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19999 for 574 contacts (-34.8/contact) +
2D Compatibility (PS) -9227 + (NN) 1504 + (LL) 3740
1D Compatibility (HY) -800 + (ID) 650
Total energy: -25432.0 ( -44.31 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_1LKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LKN-query.scw
PDB file :
Tito_Scwrl_1LKN.pdb
: