Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNYSGEVGLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFY-GQHEPERMP--VSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
4JP5 Chain:C ((7-253))
-----------FHLGLTKNDLQGATLAIVPGDPQRVEKIAKLMDNPVHLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHINVGDVLVTTAAVRLDGASLHFAPMEFPAVADFSCTTALVNAAKSVGATTHIGITASSDTFYPGQERYDTFSGRVVRHFKGSMEEWQSMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQ------------SHAVKIVVEAARHLL------
General information:
TITO was launched using:
RESULT:
Template:
4JP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112603 for 2032 contacts (-55.4/contact) +
2D Compatibility (PS) -25384 + (NN) -17905 + (LL) 1096
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -177296.0 ( -87.25 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4JP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JP5-query.scw
PDB file :
Tito_Scwrl_4JP5.pdb
: