Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGD---SDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAIKTATRQKHIPLNS-----------------------------------------------YASLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMKMGELLSDLERKVLVL-YL----DGRSYQEISDELNRHVKSIDNALQRVKRKLEKYLEIREISL |
| 4YFK Chain:F ((359-605)) | --------------------KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE-DSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YFK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41403 for 1073 contacts (-38.6/contact) +
2D Compatibility (PS) -20268 + (NN) -4132 + (LL) 1328
1D Compatibility (HY) -4000 + (ID) 2150
Total energy: -70625.0 ( -65.82 by residue)
QMean score : 0.565
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