Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNII----VLEDLTLDTAKTKEMAAILKGLSVE-KKALIV---TADANEAVALSARNIPGVTVVEAN---------------GINVLDVVNHEKLLITKAAVEKVEEVLA
1DMG Chain:A ((1-225))
-AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSD-----------------------------------------------------WSKKLNKKMKKLALRSALSVKYRE----NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96479 for 1097 contacts (-87.9/contact) +
2D Compatibility (PS) -16261 + (NN) -8304 + (LL) 1588
1D Compatibility (HY) -18400 + (ID) 3100
Total energy: -140956.0 ( -128.49 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: