Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGLYLWNVYYDN----------------
1DJ0 Chain:A ((1-264))
PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP--ITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD
General information:
TITO was launched using:
RESULT:
Template:
1DJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166165 for 2030 contacts (-81.9/contact) +
2D Compatibility (PS) -26458 + (NN) -11640 + (LL) 24
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -225939.0 ( -111.30 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1DJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJ0-query.scw
PDB file :
Tito_Scwrl_1DJ0.pdb
: