Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTDTHSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDS--------ISPEEQDRLNRIAEVMYLPSE----ESWRTHFLQTASFLKEESEAEKWLADYDQQTTAAKKTLQHVQ---GLRFLFLRLHKQNFYL-AHNRSVREVFFGDLGFS------SATTADTPSEQAISLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEYSACGH--ERIVQQTVSLLSGDCP |
2X4L Chain:A ((52-349)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PWSFKDDRG--TTVKLDKVPANIVAF-TGVAAALFDYGVEVKGVFGPTTTKDGKPDVQAGDLDVDKVTVLGNEWGKLNVEKYASLAPEVLITTTFDTAGTLWSVPEESKDKVAKLAPSVAISVFDRQLTQPLQRMWELAESLGADMKAKKVTDAKAAFDKAAARLRAAAKAKPEIRVLAGSASPDLFYVSGTNLSVDLEYFKALGVNFVEPSEDAKKATGGWFESLSWENVDKYPADVIIMDDRASTIQ----PADITEGTWKQLPAVKAGQVIARSPEPILSYDKCTPLLDNLAEAIENAKKVG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X4L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99865 for 2258 contacts (-44.2/contact) +
2D Compatibility (PS) -28465 + (NN) -8294 + (LL) 19416
1D Compatibility (HY) -4800 + (ID) 2600
Total energy: -124608.0 ( -55.19 by residue)
QMean score : 0.326
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