Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLN--ENSSDTIEKSVDMIRHHPLVPSY-----------VKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
2W3Q Chain:A ((61-231))
--KGQAPNFLWIGCADSRVPEV--TIMARKPGDVFVQRNVANQFKPEDDSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLP----GGTPLVRYLEPIIRLKHS--LPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYDLSTGNIVDLNVTQG------------
General information:
TITO was launched using:
RESULT:
Template:
2W3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50133 for 1206 contacts (-41.6/contact) +
2D Compatibility (PS) -15246 + (NN) 5473 + (LL) 1000
1D Compatibility (HY) -6400 + (ID) 900
Total energy: -66206.0 ( -54.90 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_2W3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3Q-query.scw
PDB file :
Tito_Scwrl_2W3Q.pdb
: