Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGKDAIPVLVEALKEE-GSLCNIAAAVLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIGKP-SLPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
1TE4 Chain:A ((1-110))
--------------MADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDER--AVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLET-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TE4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45090 for 769 contacts (-58.6/contact) +
2D Compatibility (PS) -11420 + (NN) -4846 + (LL) 3668
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: -60738.0 ( -78.98 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1TE4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TE4-query.scw
PDB file :
Tito_Scwrl_1TE4.pdb
: