Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQNDFTFPSDTYLLLYFWSMSCPNC---HQLTDKVLQDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRG-LAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL----
2FY6 Chain:A ((1-143))
VPHTLS------TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADL
General information:
TITO was launched using:
RESULT:
Template:
2FY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82880 for 1023 contacts (-81.0/contact) +
2D Compatibility (PS) -14563 + (NN) -9030 + (LL) 320
1D Compatibility (HY) -800 + (ID) 1450
Total energy: -108403.0 ( -105.97 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2FY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FY6-query.scw
PDB file :
Tito_Scwrl_2FY6.pdb
: