Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIGYWKYKNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDKNRIPVSQGTEVINPNTFSSFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQFSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHLIMTSENNEWSRALVNSSTSGSYDISLSDQLSVAKVWSFKYNTLATARSTMSNVKAKIDYEYDVTKQF |
| 4C47 Chain:A ((23-213)) | ----------------------------------DYFADKHLVEEMKEQQKEQETKINLLEKQQKEQEAKINLLEKQQATIINTTKKVTEVVGRVERKQRLFDYTELDPSQ----------------THYFIINNGN--------IGLAGRILSIEPI-------------------DNGSVIHLDLVNLLSIP----VSNLAFNMTWGTKKPSE-----AKDLPRWKQLLLNTKMDSTIELLPGAWTNVTLTLK------GVSPNNLKYLKIGIDME-NVIFD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C47.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10460 for 1118 contacts (9.4/contact) +
2D Compatibility (PS) -20387 + (NN) -4923 + (LL) 6496
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -13904.0 ( -12.44 by residue)
QMean score : -0.002
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