Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVTLGYLRESLSNHLE-NEVCQRICKKMLAKR-YANEEEFVKDLDDNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL--
2GSV Chain:A ((3-69))
ELFSVPYFIENLKQHIEMNQSEDKI------HAMNSYYRSVVSTLVQDQLT-------------KNAVVLKRIQHLDEAYNKVKRG
General information:
TITO was launched using:
RESULT:
Template:
2GSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2881 for 365 contacts (-7.9/contact) +
2D Compatibility (PS) -6864 + (NN) -3522 + (LL) 2128
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -14689.0 ( -40.24 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2GSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSV-query.scw
PDB file :
Tito_Scwrl_2GSV.pdb
: