Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAARFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTISKQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQYEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAYLAGYIAEKYNYTD-----EELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFYVLLPVWMVSYDYERAEHIFAMNGQTGKVVG-KPPISRGKVAAWFSGIAGGTFLALKLVSLMMGGGF------------
4O6M Chain:A ((29-370))MRLAYVK----NHEIYGEKLLGLT----LRERIEKTLQRAGFDVRFFDELSLE---EAEDYLIILEPVLILERDLLLEGRKILVSD-----------GFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYE-----IWAIKLSNDNLKTAEKLLLSSLIDG-WIAREINRKVSLRISRLLA-DTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRSY


General information:
TITO was launched using:
RESULT:

Template: 4O6M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1424 -115798 -81.32 -371.15
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -81.32
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.121

(partial model without unconserved sides chains):
PDB file : Tito_4O6M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4O6M-query.scw
PDB file : Tito_Scwrl_4O6M.pdb: