Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNEPVKRGKKNRWELNLPI----MTYVVADDWIDKLGRETFTLWLRFHTWVDREDELRDYDRIPRSFENIYKKTLGISKSKFYR-LIKPLWEYGLIDIIEYEESNRNSTKPKNIIVYEYPLHEIERKYKPLEKLRDWDKDYNSVSKELGKTGGRPRKKDSEEEP---EKKPEEVTKKKRKYKLKRVIHNGFKNETVEGFKNETVEGFKNETVTVSKIKPNNYSNIFNNLSNISTNVSNNLLIDDDEEIENEPTGRTINRSLLFSQEDIKQ--AYQFINRFSV-IQLRENFSFDKHFEERLVCYLWKAGISTFYTHEISKMIKKIADYEKSKKGRLNPIRDRALYMVNGLVMNRASSQSEHATYKLNQYKKQKEQEKQQQEQQRSRVPFYNWLEEREEQTEGQLPTT
4YDD Chain:B ((5-333))MKAP--RRQLTYVTDLNKCIGCQTCTVACKKLWTTGPGQD-FMYW--------RNVETAPGLGYPRNWQT---KGGGYKNGELQKGKIPPMIDYG-IPFEFDYAGRLFEGKPGRV-----------RPSPTPRSAPNWDEDQGAGEYPNNSFFYLPRMCNHCTKPACLEACPNEAIYK-REQDGIVVIHQ------------DKCKGAQACVQSCPYAKP-----YFNPLTNKANKCIG-CFPRIEQGVAPACVAQCVGRAMHVGFVDDVNSSVYKLIKQYKVALPLHPEFG---------------TEPNVFYVPPVLGPRIEMANGEPSTDPKIPLAQLEGLF-----------GKQVRDVLAILQSEREKKMKGLASDLMDVLI-------GRRSTDMMISPLT


General information:
TITO was launched using:
RESULT:

Template: 4YDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1655 132404 80.00 416.36
target 2D structure prediction score : 0.35
Monomeric hydrophicity matching model chain B : 0.64

3D Compatibility (PKB) : 80.00
2D Compatibility (Sec. Struct. Predict.) : 0.35
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.032

(partial model without unconserved sides chains):
PDB file : Tito_4YDD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YDD-query.scw
PDB file : Tito_Scwrl_4YDD.pdb: