Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
1H0P Chain:A ((21-162))
-----------------------GRIVIGLFGKTVPKTATNFIELAKK------------PKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKIL--EGMDVVRKIEQTEKLPGDRPKQDVII------
General information:
TITO was launched using:
RESULT:
Template:
1H0P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56179 for 1038 contacts (-54.1/contact) +
2D Compatibility (PS) -15027 + (NN) -14130 + (LL) 1956
1D Compatibility (HY) -10400 + (ID) 3700
Total energy: -97480.0 ( -93.91 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1H0P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H0P-query.scw
PDB file :
Tito_Scwrl_1H0P.pdb
: