Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF
3VDY Chain:A ((3-107))
-HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNA-SGE---IEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYE----VNVYVTEVLADTVRFMD------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53038 for 649 contacts (-81.7/contact) +
2D Compatibility (PS) -11010 + (NN) -4443 + (LL) 76
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -76815.0 ( -118.36 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: