Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRTPVILVAGQDHT--DEVTGALLRRTG---TVVVEHRFDGHVVRRMTATLSRGELITTEDALEFAHGCVSCTIRDDLLVLLRRLHRRD-----NVGRIVVHLAPWLEPQPICWAIDHVRVCVGHGYPDGPAALDVRVAAVVTCVDCVRWLPQSLGEDELPDGRTVAQVTVGQAEFADLLVLTHPEPV-----AVAVLRRLAPRARITGGVDRVELALAHLDDNSRRGRTDTPHTPLLAGLPPLAADGEVAIVEFSARRPFHPQRLHAAVDLLLD----GVVRTRGRLWLANRPDQVMWLESAGGGLRVASAGKWLAAMAASEVAYVDLERRLFADLMWVYPFGDRHTAMTVLVCGADPTDIVNALNAALLSDDEMASPQRWQSYVDPFGDWHDDPCHEMPDAAGEFSAHRNSGESR |
1NIJ Chain:A ((2-318)) | NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA------TQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFS----------HEVLCQRYLLDGVIALVDAVH-ADEQMNQF---------TIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYT-VTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV---------------------------QRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFA----------------------------GLRK------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205440 for 2424 contacts (-84.8/contact) +
2D Compatibility (PS) -32599 + (NN) -17662 + (LL) 5040
1D Compatibility (HY) -14400 + (ID) 2500
Total energy: -267561.0 ( -110.38 by residue)
QMean score : 0.341
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