Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGLPLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAP-RAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
3DT5 Chain:A ((15-133))
---RLKAIEDRLEK-------------------FYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGS-------------ANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEI---------SLPEKPDWLIGYK--
General information:
TITO was launched using:
RESULT:
Template:
3DT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22931 for 795 contacts (-28.8/contact) +
2D Compatibility (PS) -12562 + (NN) -5862 + (LL) 4148
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -44107.0 ( -55.48 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_3DT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DT5-query.scw
PDB file :
Tito_Scwrl_3DT5.pdb
: