Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MTAGSDLDDFRGLLAKAFDERVVAWTAEAEAQERFP--RQLIEHLGVCGVFDAKWATD---ARPDVGKLVELAFALGQLAS--AGIGVGVSLHDS-AIAILRRFGKSDYLRDICDQAIRGAAVLCIGASEESGGSDLQIVETEIRSR-DGGFEVRGVKKFVSLSPIADHIMVVARSVDHDPTSRHGNVAVVAVPAAQ--VSVQTPYRKVGAGPLDTAAVCI-DTWVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIA---EQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEVLWELVAAGMTPDHDGYAAVVGASKA |
| 1IVH Chain:A ((6-392)) | VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSG---LGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKG-NHYILNGNKFWITNGPDADVLIVYAKTDLAAV-PASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGY-INDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252644 for 3225 contacts (-78.3/contact) +
2D Compatibility (PS) -40639 + (NN) -23918 + (LL) 840
1D Compatibility (HY) -18400 + (ID) 4050
Total energy: -338811.0 ( -105.06 by residue)
QMean score : 0.486
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