Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSGHPVTLDDLPLRADLRGKAPYGAPQLAVP--VRLNTNEN---PHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPG--IAIVDEAYGEF---SSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATDLVPVTRSPVGAP |
| 4R2N Chain:B ((6-353)) | --------------LRPELAG-LPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATDTV-------NRYPDNGCVQLKAALARHL----GPDFAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVP-LTDHTFDLYAMLATVTDRT-RLIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAH-NNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVVAERARVSAELRAAGFTLPPSQANFVWLPLGSRTQDFVEQAADARIVVRPYGTDG-VRVTVAAPEENDAFLRFARRWRSD------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175576 for 2842 contacts (-61.8/contact) +
2D Compatibility (PS) -37183 + (NN) -24663 + (LL) 1936
1D Compatibility (HY) -19600 + (ID) 6050
Total energy: -261136.0 ( -91.88 by residue)
QMean score : 0.543
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