Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MATTLPVQRHPRSLFPEFSELFAAFPS--FAGLRPTFDTRLMRLEDEMKEGRYEVRAELPGVDPDKDVDIMVRDG-QLTIKAERTEQKDFDG----RSEFAYGSFVRTVSLPVGADEDDIKATYDKGILTVSVAVSEGKPTEKHIQIRSTN
1GME Chain:A ((2-151))
SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK-KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAE-VKKPEVKAIQISG
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42260 for 788 contacts (-53.6/contact) +
2D Compatibility (PS) -15627 + (NN) -8844 + (LL) -312
1D Compatibility (HY) -3600 + (ID) 1850
Total energy: -72493.0 ( -92.00 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: