Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTALEVLGGWPVPAAAAAVIGPAGVL--ATHG----------DTARVFALASVTKPLVARAAQVAVEEGVVNLDTPAG---P-------------------------PGSTVRHLLAHTSGLAMHSD-------------------------------QALARPGTRRMYSNYGFTVLAESVQRESGIEFGRYLTEAVCEPLGMVTTRLDGGP-------------------------------AAAGFGATSTVADLAVFAGDLLRP------STVSAQMHADATTVQFPGLDGVLP--GYGVQRPNDWGLGFEIRNSKSPHWTGECNSTRTFGHFGQSGGFIWVDPKADLALVVLTARDFGDWALDLWPAISDAVLAEYT |
4IVK Chain:A ((51-424)) | --LKNEIQAKTMPGAVMMIKRNGETAYFSSFGLRDPDTKEPMTAETIFRIYSMSKPITTVAAMMLVEEGKLQLDEPVSKYIPSFANVKVGVETKGENGMALETGPVKRAITIQDLMRHTSGITYGFVGDGLVKKAYIASNLFDGDFDNAEFAERIAKLPLVYQPGTTWDYGH-STDILGRVVEVVSGKSLYQFEKERLLDPLGMKDTGFYVTDPAKKSLVAEAMPNDRKIGGSEMFDPRVQKKWEPGGQGMVSTIGDYARFTQMVLNGGTLDGKRYLSPKTIAYMGSNHIPQASGIVPGAYYLPGPGVGFGLGFAVRTEAGVTPV--EGSVGDLSWGGAGGTVFWIDPKENLTVVFMAPMVSPR--ARVWRTLRNIVYGAF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138148 for 2205 contacts (-62.7/contact) +
2D Compatibility (PS) -28335 + (NN) -12906 + (LL) 636
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -196103.0 ( -88.94 by residue)
QMean score : 0.385
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