Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTALNRAVASARVGTEVIRVRGLTFRYPKAAEPAVRGMEFTVGRGEIFGLLGPSGAGKSTTQKLLIGLLRDHGGQATVWDKEPAEWGPDYYERIGVSFELPNHYQKLTGYENLRFFASLYAGAT----ADPMQLLAAVGLADDAHTLVGKYSKGMQMRLPFARSLINDPELLFLDEPTSGLDPVNARKIKDIIVDLKA-RGRTIFLTTHDMATADELCDRVAFVVDGRIVALDSPTELKIARSRRR--VRVEYRGDGGG-------L-ET-AEFGMDGLADDPAFHSVLRNHHVETIHSREASLDDVFVEVTGRQLT |
| 4YER Chain:A ((2-306)) | -------------MEDIIVVENLVKKFGDF--EAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTELKRMVGKEIIYVR--------DFIESCRKLPDGRLELNVED---------------IEEITYHKPTLNDVFLHLTGRE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 31861 for 1875 contacts (17.0/contact) +
2D Compatibility (PS) -25426 + (NN) 2668 + (LL) 2752
1D Compatibility (HY) 13200 + (ID) 350
Total energy: 24705.0 ( 13.18 by residue)
QMean score : -0.056
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