Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSK-LVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGV-VGKVPDCINSGKY--------IEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS |
3BD2 Chain:A ((14-177)) | ----------------------------------------------------------------------------GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKV-----EYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAA---QQDQNKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLK----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75474 for 1194 contacts (-63.2/contact) +
2D Compatibility (PS) -16277 + (NN) -6169 + (LL) 5244
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -99126.0 ( -83.02 by residue)
QMean score : 0.445
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