Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEPDVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATGGWQSFRV---PCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMRDLLPKKKGKSLTVTVEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLI--TSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVFW-HEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTESCPRGIEVTKAIQEVKRALMFTR
4YTM Chain:F ((31-266))
------------------TGKRIKTFEIYRFNPEEP---GAKPKLQKFDVDLDKC--GTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLAC------ICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLL----
General information:
TITO was launched using:
RESULT:
Template:
4YTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145268 for 1733 contacts (-83.8/contact) +
2D Compatibility (PS) -25042 + (NN) -20538 + (LL) 1768
1D Compatibility (HY) -20800 + (ID) 4900
Total energy: -214780.0 ( -123.94 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_4YTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTM-query.scw
PDB file :
Tito_Scwrl_4YTM.pdb
: