Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
2BM5 Chain:A ((5-186))
-QQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
General information:
TITO was launched using:
RESULT:
Template:
2BM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155092 for 1553 contacts (-99.9/contact) +
2D Compatibility (PS) -19115 + (NN) -1783 + (LL) 208
1D Compatibility (HY) -24400 + (ID) 9100
Total energy: -209282.0 ( -134.76 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_2BM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BM5-query.scw
PDB file :
Tito_Scwrl_2BM5.pdb
: