Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRASGLLPRWEQTQRFIGEMRGT
3RYK Chain:A ((25-198))
MKVIETNFTDAKLLEPRLFGDDRGFFTESYNKKVLETL-GVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYKVDEYYSADHDSGVLWNDKELAIPWPV---TSPILSDKDRILPLL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100628 for 1318 contacts (-76.3/contact) +
2D Compatibility (PS) -18708 + (NN) -10757 + (LL) 1772
1D Compatibility (HY) -16000 + (ID) 3000
Total energy: -147321.0 ( -111.78 by residue)
QMean score : 0.724
(partial model without unconserved sides chains):
PDB file :
Tito_3RYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYK-query.scw
PDB file :
Tito_Scwrl_3RYK.pdb
: