Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTR-FEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLT-AERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
1N2F Chain:A ((1-142))
-----MQTIKALYTATATATGG---RDGRAVSSDGVLDVKLSTPREMGGQGGAATNPEQLFAAGYSACFIGAMKFVAGQRKQTLPADASITGKVGIGQIPGG---FGLEVELHINLPGMEREAAEALVAAAHQVCPYSNATRGNIDVRLNVSV
General information:
TITO was launched using:
RESULT:
Template:
1N2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41205 for 924 contacts (-44.6/contact) +
2D Compatibility (PS) -15161 + (NN) -5822 + (LL) 1044
1D Compatibility (HY) -2400 + (ID) 1550
Total energy: -65094.0 ( -70.45 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_1N2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2F-query.scw
PDB file :
Tito_Scwrl_1N2F.pdb
: