Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIGLGIATLL---FSATALAAPKPCEELKAEIETKIQSAGVTSYTLEIVRNDEVSDPNMVVGSCENGTKKIIYQKNDD
1RYJ Chain:A ((4-73))
-MVIGMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFD---------GDIIEVIRVIYGG
General information:
TITO was launched using:
RESULT:
Template:
1RYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4666 for 405 contacts (-11.5/contact) +
2D Compatibility (PS) -7442 + (NN) -2768 + (LL) 540
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -18086.0 ( -44.66 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1RYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYJ-query.scw
PDB file :
Tito_Scwrl_1RYJ.pdb
: