Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSSSKLVNAVAQRLLDTIEQGRWVAGQMLPGQRELAEQMEISRPSLREAIMVLETLGVVRSL----PGKGVMVLERSEP-LREV----AAPGEATMEDVLQLRYALEPFIVGIVAQSAGAAEISELRLLLLDLREAVEDGDPQALVEAYTAFHRRLVKLTSNPIFLSVSEQIGSALERSD--NLVR--RQPEYAEEILQEHDAILRAIRQHDSERASQAMRQHILNEGARLNIDLRLPQV
2DI3 Chain:A ((2-230))
---SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAERG--DWDVAEALLEKMDDP--SLPLEDFLRFDAEFHVVISKGAENPLISTLMEALRLSVADHTVARARALPDWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEAL---
General information:
TITO was launched using:
RESULT:
Template:
2DI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91651 for 1571 contacts (-58.3/contact) +
2D Compatibility (PS) -23893 + (NN) -13150 + (LL) 1032
1D Compatibility (HY) -2800 + (ID) 2500
Total energy: -132962.0 ( -84.64 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2DI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DI3-query.scw
PDB file :
Tito_Scwrl_2DI3.pdb
: