Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKDGKVLVHGMSKA-----------DIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREFLA-PLVEAGVDIFHCSTRRF--WIP---EFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 2Q3R Chain:A ((12-334)) | -------LLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPG-GFLITEATGVS-DTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAP-ISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAVAKEIGPDR-VGIRLSPFA--DYMESGDTNPGALGLYMAESLNKYGILYCHVIEARMHTLMPMRKAFKGTFISAGGFTRE--------------DGN----------------------EAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Q3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148011 for 2606 contacts (-56.8/contact) +
2D Compatibility (PS) -32333 + (NN) -16644 + (LL) 2736
1D Compatibility (HY) -24400 + (ID) 6000
Total energy: -224652.0 ( -86.21 by residue)
QMean score : 0.514
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