Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERKRWLAGCLSALLSLPLAAAVPGPDAPADLARGKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREYLYKQIYDLKTQRRR----NPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPRQRERGRQLFENGLAQRGVPPCVTCHGPAAQGLAALKAPRLAGQWAEYLATQLHGFRDGKRGNSATMRAVAGGLEDSHIQALAGYLGSLGP
1H1O Chain:A ((12-183))
---------------------------------------VSSDCMVCHGMTGRDTL--YPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITALADYFNAQKPPMQSS-GIKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQGAG--PFPRLAGQRYGYIIQQLTYFHNGTR-VNTLMNQIAKNITVAQMKDVAAYLSSL--
General information:
TITO was launched using:
RESULT:
Template:
1H1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22063 for 1305 contacts (-16.9/contact) +
2D Compatibility (PS) -18084 + (NN) -12335 + (LL) 2496
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -61886.0 ( -47.42 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1H1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1O-query.scw
PDB file :
Tito_Scwrl_1H1O.pdb
: