Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSHQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGF-EYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDVQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEV-AKMESDVAEGQVVVAPYFSSI--------DTAASRAFVQACHGFFPENATITAWAEAAYWQTLLLGR----AAQAAGS---WRVEDVQRHLYDI-CIDAPQGPVRVERQNNHSR--LSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASMGGGALP |
| 3UK0 Chain:A ((4-362)) | ---ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPD--TSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNG--LIYQTHGAASMDFIRIAG-KSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS-SRSQFAGHSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVK-NGKYVIVK------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UK0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190166 for 3169 contacts (-60.0/contact) +
2D Compatibility (PS) -36771 + (NN) -18036 + (LL) 880
1D Compatibility (HY) -1600 + (ID) 2800
Total energy: -248493.0 ( -78.41 by residue)
QMean score : 0.629
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