Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVP--DATIAALD-KSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLS-RKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLDPGMRFP |
| 4F3V Chain:A ((1-275)) | -GHMTDRLASLFESAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIA-----IGGLYGD-----ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----------------SEHLVAWMKAVVYGAA---------ERWTDVIDQVKSAGK---------------WPDKFLAGAAGVAHGVAAANL-------------------------ALFTEAERRLTEANDSPA-------------------GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT------------------HPEPKVAAALKDP-SYRLKTTTAEQIASRADPWDPGSVV--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -13044 for 2241 contacts (-5.8/contact) +
2D Compatibility (PS) -29260 + (NN) -14218 + (LL) 8160
1D Compatibility (HY) -6800 + (ID) 2650
Total energy: -57812.0 ( -25.80 by residue)
QMean score : 0.231
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