Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSTIHPLPSFGLGTFRLTGQVVVDSVRSALELGYRAIDTAQIYGNEADIGRAIAESGVPRSELFLTTKVWVDNYAREKLLASLRESLEKLRTDRLDLVLIHWPAPG--NGVELGEYMAALAEAKSLGLTRRIGVSNFNIELTRQAIAAVGAGEISTNQIELSPYLQNRALTAYLEEQGIAVTSYMTLAYGK--VLKDPTLAGIAARHRATVAQVALAWAMQLGYAVIPSSTRRENLASNLLARDLRLDAEDMARIAGLERNGREVSPQGLAPAWD
1M9H Chain:A ((14-262))
-------IPQLGYGVYKVPPADTQRAVEEALEVGYRHIDTAAIYGNEEGVGAAIAASGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVHWPTPAADNYVHAWEKMIEL---RAAGLTRSIGVSNHLVPHLERIVAATGVVP-AVNQIELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLRWHLQKGFVVFPGSVRREHLEENLDVFDFDLTDTEIAAIDAMD----------------
General information:
TITO was launched using:
RESULT:
Template:
1M9H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122586 for 2114 contacts (-58.0/contact) +
2D Compatibility (PS) -26895 + (NN) -12271 + (LL) 1336
1D Compatibility (HY) -16000 + (ID) 5000
Total energy: -181416.0 ( -85.82 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1M9H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M9H-query.scw
PDB file :
Tito_Scwrl_1M9H.pdb
: