Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEKVNKWYGA----YHALADVDEQVGRGEVVVVCGPSGSGKSTLIRTLNRLEPIQGGRILIDGQDIHAPGLDLNRF----RSHIGFVFQQFNLFPHLNVLDNCTLASL-RLRGLKPAEARRQ-AMALLERVGLADKAAAF-PARLSGGQQQRVAIARALAMEPPLMLFDEPTSALDPEMVGEVLLVMRDL-ARDGMTMVVVTHEMGFAHDVADRVLFMDAGRVLERASPDDFFNRPQHPRARKFLADIRTPFAQPL
1L2T Chain:B ((1-223))
MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160273 for 1705 contacts (-94.0/contact) +
2D Compatibility (PS) -23003 + (NN) -11108 + (LL) 1676
1D Compatibility (HY) -20400 + (ID) 4600
Total energy: -217708.0 ( -127.69 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: