Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3HSJ Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLAAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3HSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107130 for 1112 contacts (-96.3/contact) +
2D Compatibility (PS) -16152 + (NN) -7204 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -150354.0 ( -135.21 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3HSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HSJ-query.scw
PDB file :
Tito_Scwrl_3HSJ.pdb
: