Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTTPHLMLEPAFHPGLDTAGSGRDAIGLGAATSGRLDARHGTILSLEDINVSFDGFKALRDLTLYIGVGELRCIIGPNGAGKTTLMDVITGKTRPQSGTAYFGDTLDLTRMSEVQIAQAGIGRKFQKPTVFEALSVFENLELAQRADKS-VWAS-LRAR---LDGTQRERIEEVLATIRLLESRQRPAGLLSHGQKQFLEIGMLLVQEPQLLLLDEPVAGMTDAETEFTAELFKSLAR-KHSLMVVEHDMGFVGSIADHVTVLHQGHVLAEGSLAEVQADEQVIEVYLGR
1G6H Chain:A ((4-243))
----------------------------------------TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN-KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN----------
General information:
TITO was launched using:
RESULT:
Template:
1G6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133381 for 1885 contacts (-70.8/contact) +
2D Compatibility (PS) -25398 + (NN) -11971 + (LL) 2724
1D Compatibility (HY) -17200 + (ID) 3600
Total energy: -188826.0 ( -100.17 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1G6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G6H-query.scw
PDB file :
Tito_Scwrl_1G6H.pdb
: