Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPECARAAGDAPLRSLEQANRTRFPFFSDVKGDHRLVLAAVETTVLVLIFAVSLLGNVCALVLVARR-RRRGATACLVLNLFCADLLFISAIPLVLAVRWTEA-WLLGPVACHLLFYVMTLSGSVTILTLAAVSLERMVCIVHLQRGVRGPGRRARAVLLALIWGYSAVAALPLCVFFRVVPQRLPGADQEISICTLIWPT-IPGEISWDVSFVTLNFLVPGLVIVISYSKILQTSEHLLDARAVVTHSEI-------------TKASRKRLTVSLAYSESHQIRVSQQDFRLFRTLFLLMVSFFIMWSPIIITILLILIQNFKQDLV---------IWPSLFFWVVAFTFANSALNPILYNMTLCRNEWKKIFCCFWFPEKGAILTDTSVKRNDLSIISG |
4XNV Chain:A ((38-382)) | -SFKCALTK----------------------TGFQFYYLPAV----YILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVY-PKSLGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRK----NKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLA----------------------GDTFRRR-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -285216 for 2307 contacts (-123.6/contact) +
2D Compatibility (PS) -31912 + (NN) -6815 + (LL) 3944
1D Compatibility (HY) -26800 + (ID) 3000
Total energy: -349799.0 ( -151.63 by residue)
QMean score : 0.264
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