Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVLNVYCCFFQISDIQTMKIN--QTILKEFIL--------VGFSVYPHVQTFLF-VVFFCLYLLTLAGNLIIMGLTWVDRSLHTPMYLFLSALSFSETCYTLTIVPKMLEDLLAKDRSISV-TGCSLQMCFFLGLGGTNCIILTLMGYDRFLAICNPLRYPLLMTNIVCGQLVASACTAGFFISLTETALIFRDSFCRPNLVKHFFCHMLAVIRLSCIDSNHTEFIITLISVSGLLGTLLLIILTDVFIISTVLRIPSAEGKQKAFTTCASHLTVVIIHFGFASIVYLKPEASGDDTLIAVPYTVITPFLSPIIFSLRNKDMKNAFRRMMGNTVALKK---- |
3FMG Chain:A ((28-262)) | --TSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKY---------DATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPL------------------------------------------NTQTLG----------------------------------IGCLTTDTATFEEVATA-------EKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVG------------GSDVLDITADPTTAP-QTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FMG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206895 for 1566 contacts (-132.1/contact) +
2D Compatibility (PS) -22809 + (NN) 1387 + (LL) 9408
1D Compatibility (HY) -8800 + (ID) 1900
Total energy: -229609.0 ( -146.62 by residue)
QMean score : 0.284
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