Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANVTLVTGFLLMGFSNIQKLRILYGVLFLLIYLAALMSNLLIITLITLDVKLQTPMYFFLKNLSFLDVFLVSVPIPKFIVNNLTHNNSISILGCAFQLLLMTSFSAGEIFILTAMSYDRYVAICCPLNYEVIMNTGVCVLMASVSWAIGGLFGTAYTAGTFSMP-----FCGSSVIPQFFCDVPSLLRISCS-----ETLMVIYAGIGVGAC---------LSISCFICIVIS-------YIYIFSTVLKIPTTKGQSKAFSTCFPHLT--VFTVFIITAYFVYLKPPSNSPSVIDRLLSVIY----TVMPPVFNPVTYSLRNNDMKC--ALIRLLQKTYGQEAYFI---------------------------------------------------------------------------------------------------------------------------------- |
| 3ODU Chain:A ((37-502)) | ----------PCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT--LPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225746 for 1981 contacts (-114.0/contact) +
2D Compatibility (PS) -30665 + (NN) 4030 + (LL) 960
1D Compatibility (HY) -10400 + (ID) 2600
Total energy: -264421.0 ( -133.48 by residue)
QMean score : 0.032
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