Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDDGKVNASSEGYFILVGFSNW---------------PHLEVVIFVVVLIFYLMTLIGNLFIIILSYLDSHLHTPMYFFLSNLSFLDLCYTTSSIPQLLVNLWGPEKTISYAGCMIQLYFVLALGTTECVLLVVMSYDRYAAVCRPLHYTVLMHPRFCHLLAVASWVSGFTNSALHSSFTFWVPLCGHRQVDHFFCEVPALLRLSCV-------DTHVNELTLMITSSIFVLIPLILILTSYGAIVRAVLRMQSTTG----LQKVFGTCGAHLMAVSLFFIPAMCIYLQPPSGNSQDQGK-------FIALFYTVVTPSLNPLIYTLRNKVVRGAVKRLM-------GWE----------------- |
1U19 Chain:A ((4-349)) | MNG-----TEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAA--------PPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260811 for 2295 contacts (-113.6/contact) +
2D Compatibility (PS) -29144 + (NN) -390 + (LL) 1048
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -291847.0 ( -127.17 by residue)
QMean score : 0.125
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