Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MYKNILLGVDTQLKNEKALKEVSKLAGE-GTVVTVLNAISEQDAQ--ASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK----
1MJH Chain:A ((3-162))
VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKVE-EFENELKN-KLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKNS
General information:
TITO was launched using:
RESULT:
Template:
1MJH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37363 for 1005 contacts (-37.2/contact) +
2D Compatibility (PS) -15075 + (NN) -10446 + (LL) 64
1D Compatibility (HY) -13600 + (ID) 2350
Total energy: -78770.0 ( -78.38 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1MJH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MJH-query.scw
PDB file :
Tito_Scwrl_1MJH.pdb
: