Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKILLTNDDGYHAKGIKALEQALENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLKWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK |
4XER Chain:B ((16-257)) | --RILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGD---IAVQMGTPTDCVYLGVNALMRPRP-DIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSL-------NGYQHYDTAAAVTCALLRGLSRE--PLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPD----TDFAAVDEGYVSVTPLHVDLTAASAHDVVSDWLDSVGV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -74408 for 1998 contacts (-37.2/contact) +
2D Compatibility (PS) -25766 + (NN) -2113 + (LL) 920
1D Compatibility (HY) -18400 + (ID) 4650
Total energy: -124417.0 ( -62.27 by residue)
QMean score : 0.408
|
|
|