Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTNNHYYTNDETIKHNRKTWQVMLKGFNMSFTSDNGVFSKNTVDFGSKLLIESFELETKIGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKIT--NTHIYESSVYDNVTANDYQAIISNPPIRAGKKIVHAILEGAYDHLQETGELWIVIQKKQGGPSAEKKMEEVFGNVETVAKDKGYFIFKSVKN
1DUS Chain:A ((11-196))
-------------KSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVD-KDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK-
General information:
TITO was launched using:
RESULT:
Template:
1DUS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16850 for 1511 contacts (-11.2/contact) +
2D Compatibility (PS) -19138 + (NN) -1190 + (LL) 580
1D Compatibility (HY) -1600 + (ID) 1900
Total energy: -40098.0 ( -26.54 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1DUS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DUS-query.scw
PDB file :
Tito_Scwrl_1DUS.pdb
: