Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNRRERRKHKRRKNMIIVLSTVFLMFIATSWMIYEFKSKQEQTVSAPTKKKAATATNPSENAATNEPEETKDPEPVEEKPKETIVKNQEIDNYLQKIGFSGSALVVRDGETIIQKGYMYANRDDKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTNDPISKYIPDFPNGNKILVKNFMNHTSGIVGRPNLTS-----------NMTPDQIVKAIEKRGIKSQPG-KWDYMDANYTVVGYLVEKISGQPLATYLQENIFNPAGMKHTGYYQKDVDGGKNVSTGYKIDENGVFQSPKLADLTKLYGAGDISMSTTDMYLFDKALMDKKLISEASLKKMFTKG----SKSTYGMGFYVDP-----GSYNSHGVVTGWDVSNSFSHTGRTYVILFSNVQNYIASFGKVNNDIYGFLNK |
| 3TG9 Chain:A ((1-318)) | -------------------------------------------------------------------------------------MKNHLHTIMEDWKLSGTALMKKGEDIPFIASLGFANRAERIPNEHHTRFGIASGCKLFTAIAICQLVEAGKLSFDTPLSDWLDAP--FPNVTIHHLLTHTSGVPDYFD---EDLWKDVPMYHLRRLKDFLPLFQHAPMKFPPGHRFHYNNAGFILLGLVVESVSGVTFQEYVEANVFQRAGMHESGYFAFDT-LPAKTALGYIDLEDGSWKTNLYSLPVIGGSDGGAYVTAEDMMKLWLALMRHELLNETYTQKLLTPHVHCEDDDYYGYGVWIKQQDGAISKYHVMGYDPGVCFHSAFYPTSNGIVVVCANQSSGA---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127391 for 2547 contacts (-50.0/contact) +
2D Compatibility (PS) -32253 + (NN) -23984 + (LL) 6976
1D Compatibility (HY) -19600 + (ID) 3450
Total energy: -199702.0 ( -78.41 by residue)
QMean score : 0.586
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