Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQILEDYDGRALPKLETDRLILRQRTV-GDVPAMFDYVCLEEV-AYPAGL--SPIASLEDEYDYFENRYYQNLEKAKLPSGYGITVKGSDRIIGSCAFNHRR-EDDVFEIGYL-LHPDYWGHGYMTEAVAALIEVGFTLLNLHKIEIRCYDYNKQSQRVAEKLGFTLEATIRDRKDNQGNRCVNLIYGLLRSEWE
3TCV Chain:A ((15-193))
-----------RKIFEGRYVRLEPLNAQKHGDELFAASSVEDAEQRFTWLFETPPATRAEFEPWLDKASKS-----DDPLFFAVIDKASGKVAGRQALMRIDPANGVIEIGSIYWGPLISRRPAATEAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAWFSVLDSEWP
General information:
TITO was launched using:
RESULT:
Template:
3TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94958 for 1318 contacts (-72.0/contact) +
2D Compatibility (PS) -17987 + (NN) -2453 + (LL) 1232
1D Compatibility (HY) -3600 + (ID) 1900
Total energy: -119666.0 ( -90.79 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCV-query.scw
PDB file :
Tito_Scwrl_3TCV.pdb
: