Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVLR-----FMPW-SPDSIALTESIRFKFFETFAKTGQKMIFTIVIDFNDSRDVVFLEKIQTVFQSHNQEVLFVELETELSERLKRNRTENRLKHKPSKR---DIKWSENDICLTMDYAIFNPEVAPEALTYYHKINNTCLTATETAYLIIQKINQIKEKN
3TRF Chain:A ((8-174))
--IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRR---EREMIEALCKLDNIILATGGGVVLD---EKNR----QQISET---GVVIYLTASIDTQLKRIGQKGEMR-RPLFIKNNSKEKLQQLNEIRKPLYQ---------AMADLVYPTDDLNPRQLATQILVDIKQ-----
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89381 for 1174 contacts (-76.1/contact) +
2D Compatibility (PS) -16502 + (NN) -490 + (LL) 1900
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -107723.0 ( -91.76 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: